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libabigail
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This file declares types and operations implementing the "O(ND) Difference Algorithm" (aka diff2) from Eugene W. Myers, to compute the difference between two sequences. More...
#include <cassert>#include <cstdlib>#include <memory>#include <ostream>#include <sstream>#include <stdexcept>#include <string>#include <vector>#include "abg-fwd.h"Go to the source code of this file.
Classes | |
| class | d_path_vec |
| The array containing the furthest D-path end-points, for each value of K. MAX_D is the maximum value of the D-Path. That is, M+N if M is the size of the first input string, and N is the size of the second. More... | |
| struct | deep_ptr_eq_functor |
| An equality functor to deeply compare pointers. More... | |
| struct | default_eq_functor |
| The default equality functor used by the core diffing algorithms. More... | |
| class | deletion |
| The abstraction of the deletion of one element of a sequence A. More... | |
| class | edit_script |
| The abstraction of an edit script for transforming a sequence A into a sequence B. More... | |
| class | insertion |
| The abstration of an insertion of elements of a sequence B into a sequence A. This is used to represent the edit script for transforming a sequence A into a sequence B. More... | |
| class | point |
| A class representing a vertex in an edit graph, as explained in the paper. A vertex is a basically a pair of coordinates (abscissa and ordinate). More... | |
| class | snake |
| The abstraction of the Snake concept, from the paper. More... | |
Namespaces | |
| abigail | |
| Toplevel namespace for libabigail. | |
| abigail::diff_utils | |
| Libabigail's core diffing algorithms. | |
Functions | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| void | compute_diff (RandomAccessOutputIterator a_base, RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_base, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, edit_script &ses) |
| Compute the longest common subsequence of two (sub-regions of) sequences as well as the shortest edit script from transforming the first (sub-region of) sequence into the second (sub-region of) sequence. More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| void | compute_diff (RandomAccessOutputIterator a_base, RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_base, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, vector< point > &lcs, edit_script &ses) |
| Compute the longest common subsequence of two (sub-regions of) sequences as well as the shortest edit script from transforming the first (sub-region of) sequence into the second (sub-region of) sequence. More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| void | compute_diff (RandomAccessOutputIterator a_base, RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_base, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, vector< point > &lcs, edit_script &ses, int &ses_len) |
| Compute the longest common subsequence of two (sub-regions of) sequences as well as the shortest edit script from transforming the first (sub-region of) sequence into the second (sub-region of) sequence. More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| void | compute_diff (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, edit_script &ses) |
| Compute the longest common subsequence of two (sub-regions of) sequences as well as the shortest edit script from transforming the first (sub-region of) sequence into the second (sub-region of) sequence. More... | |
| template<typename RandomAccessOutputIterator > | |
| void | compute_diff (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, edit_script &ses) |
| Compute the longest common subsequence of two (sub-regions of) sequences as well as the shortest edit script from transforming the first (sub-region of) sequence into the second (sub-region of) sequence. More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| void | compute_diff (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, vector< point > &lcs, edit_script &ses) |
| Compute the longest common subsequence of two (sub-regions of) sequences as well as the shortest edit script from transforming the first (sub-region of) sequence into the second (sub-region of) sequence. More... | |
| template<typename RandomAccessOutputIterator > | |
| void | compute_diff (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, vector< point > &lcs, edit_script &ses) |
| Compute the longest common subsequence of two (sub-regions of) sequences as well as the shortest edit script from transforming the first (sub-region of) sequence into the second (sub-region of) sequence. More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| void | compute_diff (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, vector< point > &lcs, edit_script &ses, int &ses_len) |
| Compute the longest common subsequence of two (sub-regions of) sequences as well as the shortest edit script from transforming the first (sub-region of) sequence into the second (sub-region of) sequence. More... | |
| void | compute_lcs (const char *str1, const char *str2, int &ses_len, string &lcs) |
| Compute the longest common subsequence of two strings and return the length of the shortest edit script for transforming the first string into the second. More... | |
| bool | compute_middle_snake (const char *str1, const char *str2, snake &s, int &ses_len) |
| Returns the middle snake of two strings, as well as the length of their shortest editing script. More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| bool | compute_middle_snake (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, snake &snak, int &ses_len) |
| Returns the middle snake of two sequences A and B, as well as the length of their shortest editing script. More... | |
| void | compute_ses (const char *str1, const char *str2, edit_script &ses) |
| Compute the shortest edit script for transforming a string into another. More... | |
| template<typename RandomAccessOutputIterator > | |
| void | display_edit_script (const edit_script &es, const RandomAccessOutputIterator str1_base, const RandomAccessOutputIterator str2_base, ostream &out) |
| Display an edit script on standard output. More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| bool | end_of_fr_d_path_in_k (int k, int d, RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_start, RandomAccessOutputIterator b_end, d_path_vec &v, snake &snak) |
| Find the end of the furthest reaching d-path on diagonal k, for two sequences. In the paper This is referred to as "the basic
algorithm". More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| bool | end_of_frr_d_path_in_k_plus_delta (int k, int d, RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, d_path_vec &v, snake &snak) |
| Find the end of the furthest reaching reverse d-path on diagonal k + delta. Delta is abs(M - N), with M being the size of a and N being the size of b. This is the "basic algorithm", run backward. That is, starting from the point (M,N) of the edit graph. More... | |
| bool | ends_of_furthest_d_paths_overlap (const point &forward_d_path_end, const point &reverse_d_path_end) |
| template<typename RandomAccessOutputIterator > | |
| bool | is_match_point (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, const point &point) |
| Tests if a given point is a match point in an edit graph. More... | |
| bool | point_is_valid_in_graph (point &p, unsigned a_size, unsigned b_size) |
| template<typename RandomAccessOutputIterator > | |
| void | print_snake (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator b_begin, const snake &s, ostream &out) |
| This prints the middle snake of two strings. More... | |
| int | ses_len (const char *str1, const char *str2, bool reverse) |
| Compute the length of the shortest edit script for two strings. This is done using the "Greedy LCS/SES" of figure 2 in the paper. It can walk the edit graph either foward (when reverse is false) or backward starting from the end (when reverse is true). More... | |
| template<typename RandomAccessOutputIterator , typename EqualityFunctor > | |
| int | ses_len (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, d_path_vec &v, bool reverse) |
| Compute the length of the shortest edit script for two sequences a and b. This is done using the "Greedy LCS/SES" of figure 2 in the paper. It can walk the edit graph either foward (when reverse is false) or backward starting from the end (when reverse is true). More... | |
| template<typename RandomAccessOutputIterator > | |
| int | ses_len (RandomAccessOutputIterator a_begin, RandomAccessOutputIterator a_end, RandomAccessOutputIterator b_begin, RandomAccessOutputIterator b_end, d_path_vec &v, bool reverse) |
| Compute the length of the shortest edit script for two sequences a and b. This is done using the "Greedy LCS/SES" of figure 2 in the paper. It can walk the edit graph either foward (when reverse is false) or backward starting from the end (when reverse is true). More... | |
| bool | snake_end_points (const snake &s, point &x, point &u) |
| Get the end points of the snake, as intended by the paper. More... | |
This file declares types and operations implementing the "O(ND) Difference Algorithm" (aka diff2) from Eugene W. Myers, to compute the difference between two sequences.
To understand what is going on here, one must read the paper at http://www.xmailserver.org/diff2.pdf. Throughout this file, that paper is referred to as "the paper".
The implementations goes as far as calculating the shortest edit script (the set of insertions and deletions) for transforming a sequence into another. The main entry point for that is the compute_diff() function.
Definition in file abg-diff-utils.h.
1.9.1