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I was having the same problem as Patrick Graebal (see Bash hangs, CTRL-C required). The cygwin shell was very slow to start, and executing "bash --login -i -x" showed that the time consuming programs were the same (id -un, uname -s, etc.). I also tried reinstalling base packages, a complete reinstall, etc. On a whim, I shut down SETI@Home, and things were back to normal speed.
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