problem in running SAMOVA2.0

[Hovhannes Sahakyan]

Hello,
I try to run SAMOVA2.0 with Y chromosome DNA data to find out if there is a geographic structure in my dataset. 

I can't manage to run the program. It yields an error, which you can find below.
###
Comparing input files
      1 [main] arlecore35_first 14480 find_fast_cwd: WARNING: Couldn't compute FAST_CWD pointer.  Please report this problem to
the public mailing list cygwin@cygwin.com
Opening Project...
Arlecore terminated gracefully
###
Can you please tell what can be the problem?
Best,Hovhannes