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Platypus error running Build after installing update 2.4.1.1 to Cygwin64
- From: Robert May <tpibob at gmail dot com>
- To: "cygwin at cygwin dot com" <cygwin at cygwin dot com>
- Date: Tue, 26 Jan 2016 07:05:08 +1000
- Subject: Platypus error running Build after installing update 2.4.1.1 to Cygwin64
- Authentication-results: sourceware.org; auth=none
Robert@DESKTOP-14EL82S /usr/local/bin/Platypus_0.8.1
$ ./buildPlatypus.sh
Building Platypus
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_ext
building 'htslibWrapper' extension
gcc -fno-strict-aliasing -ggdb -O2 -pipe -Wimplicit-function-declaration -fdebug-prefix-map=/usr/src/ports/python/python-2.7.10-1.x86_64/build=/usr/src/debug/python-2.7.10-1 -fdebug-prefix-map=/usr/src/ports/python/python-2.7.10-1.x86_64/src/Python-2.7.10=/usr/src/debug/python-2.7.10-1 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/include/python2.7 -c htslibWrapper.c -o build/temp.cygwin-2.4.0-x86_64-2.7/htslibWrapper.o -msse2 -msse3 -funroll-loops -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC
htslibWrapper.c:1:0: warning: -fPIC ignored for target (all code is position independent)
/* Generated by Cython 0.21.1 */
^
gcc -shared -Wl,--enable-auto-image-base -L. build/temp.cygwin-2.4.0-x86_64-2.7/htslibWrapper.o -L/usr/lib/python2.7/config -L/usr/lib -lhts -lpython2.7 -o build/lib.cygwin-2.4.0-x86_64-2.7/htslibWrapper.dll
/usr/lib/gcc/x86_64-pc-cygwin/4.9.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lhts
collect2: error: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
Setup failed. Check previous lines for errors
Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname and ISOGG YTree
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