The patched packages all need aclocal run before they are built.
The underlying problem was that those packages needed custom M4 macros, and the
macros, instead of being bundled with each package were bunded in random places
such as jg-common, and libgtk-java. Adding those as includes fixes the problem.
- For java packages, where needed run aclocal with -I
../jg-common/macros, and -I ../libgtk-java/macros.