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RE:system not working as expected


I have made an application in C code it runs great if I launched it from Cygwin 
Bash shell but if I launched it from Dos shell the call of system fails.
Why?My cygcheck is 

 Cygnus Win95/NT Configuration Diagnostics
Current System Time: Thu Oct  4 13:37:14 2001

Win9X Ver 4.10 build 67766446  A

Path:   /usr/local/bin
        /usr/bin
        /bin
        /cygdrive/d/PERL/BIN
        /cygdrive/c/WINDOWS
        /cygdrive/c/WINDOWS/COMMAND
        /cygdrive/c/PROGRA~1/NETWOR~1/MCAFEE~1

SysDir: C:\WINDOWS\SYSTEM
WinDir: C:\WINDOWS

PWD = `/home/goncal11'
USER = `goncal11'
MAKE_MODE = `unix'
HOME = `/home/goncal11'
Found: C:\cygwin\bin\bash.exe
Found: C:\cygwin\bin\cat.exe
Found: C:\cygwin\bin\cpp.exe
Found: C:\cygwin\bin\find.exe
Found: c:\WINDOWS\COMMAND\find.exe
Found: C:\cygwin\bin\gcc.exe
Found: C:\cygwin\bin\gdb.exe
Found: C:\cygwin\bin\ld.exe
Found: C:\cygwin\bin\ls.exe
Found: C:\cygwin\bin\make.exe
Found: C:\cygwin\bin\sh.exe

  678k 2001/05/21 C:\WINDOWS\SYSTEM\cygwin1.dll
    Cygwin DLL version info:
        dll major: 1003
        dll minor: 2
        dll epoch: 19
        dll bad signal mask: 19005
        dll old termios: 5
        dll malloc env: 28
        api major: 0
        api minor: 39
Thanks


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